| Ngày | Đội nhà | KQ | Đội khách |
|---|
Bảng A |
| 05/12/2006 | Barcelona | 2-0 | Bremen |
| 05/12/2006 | Chelsea | 2-0 | Levski Sofia |
| 22/11/2006 | Levski Sofia | 0-2 | Barcelona |
| 22/11/2006 | Bremen | 1-0 | Chelsea |
| 31/10/2006 | Levski Sofia | 0-3 | Bremen |
| 31/10/2006 | Barcelona | 2-2 | Chelsea |
| 18/10/2006 | Chelsea | 1-0 | Barcelona |
| 18/10/2006 | Bremen | 2-0 | Levski Sofia |
| 27/09/2006 | Levski Sofia | 1-3 | Chelsea |
| 27/09/2006 | Bremen | 1-1 | Barcelona |
| 12/09/2006 | Barcelona | 5-0 | Levski Sofia |
| 12/09/2006 | Chelsea | 2-0 | Bremen |
Bảng B |
| 05/12/2006 | Bayern | 1-1 | Inter Milan |
| 05/12/2006 | Sporting | 1-3 | Spartak Moscow |
| 22/11/2006 | Inter Milan | 1-0 | Sporting |
| 22/11/2006 | Spartak Moscow | 2-2 | Bayern |
| 31/10/2006 | Bayern | 0-0 | Sporting |
| 31/10/2006 | Spartak Moscow | 0-1 | Inter Milan |
| 18/10/2006 | Sporting | 0-1 | Bayern |
| 18/10/2006 | Inter Milan | 2-1 | Spartak Moscow |
| 27/09/2006 | Inter Milan | 0-2 | Bayern |
| 27/09/2006 | Spartak Moscow | 1-1 | Sporting |
| 12/09/2006 | Bayern | 4-0 | Spartak Moscow |
| 12/09/2006 | Sporting | 1-0 | Inter Milan |
Bảng C |
| 05/12/2006 | PSV Eindhoven | 1-3 | Bordeaux |
| 05/12/2006 | Galatasaray | 3-2 | Liverpool |
| 22/11/2006 | Liverpool | 2-0 | PSV Eindhoven |
| 22/11/2006 | Bordeaux | 3-1 | Galatasaray |
| 31/10/2006 | PSV Eindhoven | 2-0 | Galatasaray |
| 31/10/2006 | Liverpool | 3-0 | Bordeaux |
| 18/10/2006 | Galatasaray | 1-2 | PSV Eindhoven |
| 18/10/2006 | Bordeaux | 0-1 | Liverpool |
| 27/09/2006 | Bordeaux | 0-1 | PSV Eindhoven |
| 27/09/2006 | Liverpool | 3-2 | Galatasaray |
| 12/09/2006 | PSV Eindhoven | 0-0 | Liverpool |
| 12/09/2006 | Galatasaray | 0-0 | Bordeaux |
Bảng D |
| 05/12/2006 | Roma | 1-0 | Valencia |
| 05/12/2006 | Olympiacos CFP | 1-1 | Shakhtar |
| 22/11/2006 | Shakhtar | 1-0 | Roma |
| 22/11/2006 | Valencia | 2-0 | Olympiacos CFP |
| 31/10/2006 | Roma | 1-1 | Olympiacos CFP |
| 31/10/2006 | Shakhtar | 2-2 | Valencia |
| 18/10/2006 | Olympiacos CFP | 0-1 | Roma |
| 18/10/2006 | Valencia | 2-0 | Shakhtar |
| 27/09/2006 | Valencia | 2-1 | Roma |
| 27/09/2006 | Shakhtar | 2-2 | Olympiacos CFP |
| 12/09/2006 | Roma | 4-0 | Shakhtar |
| 12/09/2006 | Olympiacos CFP | 2-4 | Valencia |
Bảng E |
| 06/12/2006 | Lyon | 1-1 | Steaua Bucharest |
| 06/12/2006 | Dynamo Kiev | 2-2 | Real Madrid |
| 21/11/2006 | Real Madrid | 2-2 | Lyon |
| 21/11/2006 | Steaua Bucharest | 1-1 | Dynamo Kiev |
| 01/11/2006 | Lyon | 1-0 | Dynamo Kiev |
| 01/11/2006 | Real Madrid | 1-0 | Steaua Bucharest |
| 17/10/2006 | Dynamo Kiev | 0-3 | Lyon |
| 17/10/2006 | Steaua Bucharest | 1-4 | Real Madrid |
| 26/09/2006 | Steaua Bucharest | 0-3 | Lyon |
| 26/09/2006 | Real Madrid | 5-1 | Dynamo Kiev |
| 13/09/2006 | Lyon | 2-0 | Real Madrid |
| 13/09/2006 | Dynamo Kiev | 1-4 | Steaua Bucharest |
Bảng F |
| 06/12/2006 | Copenhagen | 3-1 | Celtic |
| 06/12/2006 | Manchester United | 3-1 | Benfica |
| 21/11/2006 | Benfica | 3-1 | Copenhagen |
| 21/11/2006 | Celtic | 1-0 | Manchester United |
| 01/11/2006 | Copenhagen | 1-0 | Manchester United |
| 01/11/2006 | Benfica | 3-0 | Celtic |
| 17/10/2006 | Manchester United | 3-0 | Copenhagen |
| 17/10/2006 | Celtic | 3-0 | Benfica |
| 26/09/2006 | Celtic | 1-0 | Copenhagen |
| 26/09/2006 | Benfica | 0-1 | Manchester United |
| 13/09/2006 | Copenhagen | 0-0 | Benfica |
| 13/09/2006 | Manchester United | 3-2 | Celtic |
Bảng G |
| 06/12/2006 | Hamburg | 3-2 | CSKA Moscow |
| 06/12/2006 | Porto | 0-0 | Arsenal |
| 21/11/2006 | Arsenal | 3-1 | Hamburg |
| 21/11/2006 | CSKA Moscow | 0-2 | Porto |
| 01/11/2006 | Hamburg | 1-3 | Porto |
| 01/11/2006 | Arsenal | 0-0 | CSKA Moscow |
| 17/10/2006 | Porto | 4-1 | Hamburg |
| 17/10/2006 | CSKA Moscow | 1-0 | Arsenal |
| 26/09/2006 | Arsenal | 2-0 | Porto |
| 26/09/2006 | CSKA Moscow | 1-0 | Hamburg |
| 13/09/2006 | Hamburg | 1-2 | Arsenal |
| 13/09/2006 | Porto | 0-0 | CSKA Moscow |
Bảng H |
| 06/12/2006 | Milan | 0-2 | Lille |
| 21/11/2006 | AEK Athens | 1-0 | Milan |
| 21/11/2006 | Lille | 2-2 | Anderlecht |
| 01/11/2006 | Milan | 4-1 | Anderlecht |
| 01/11/2006 | AEK Athens | 1-0 | Lille |
| 17/10/2006 | Anderlecht | 0-1 | Milan |
| 17/10/2006 | Lille | 3-1 | AEK Athens |
| 26/09/2006 | Lille | 0-0 | Milan |
| 26/09/2006 | AEK Athens | 1-1 | Anderlecht |
| 13/09/2006 | Milan | 3-0 | AEK Athens |
| 13/09/2006 | Anderlecht | 1-1 | Lille |
Lượt về vòng loại thứ 3:
Maccabi Haifa 1 - 1 Liverpool
* Liverpool Thắng trung cuộc 3-2
Osasuna 1 - 1 Hamburger SV
* Tỉ số chung cuộc 1-1. Hamburger SV đi tiếp nhờ luật bàn thắng sân khách
Red Star Belgrade 1 - 2 AC Milan
* AC Milan Thắng trung cuộc 3-1
Benfica 3 - 0 Austria Vienna
* Benfica Thắng trung cuộc 4-1
Valencia 3 - 0 SV Salzburg
* Valencia Thắng trung cuộc 3-1
Spartak Moscow 2 - 1 Slovan Liberec
Spartak Moscow Thắng trung cuộc 2-1
Mlada Boleslav 1 - 1 Galatasaray
* Galatasaray Thắng trung cuộc 6-3
Steaua Bucuresti 2 - 1 Standard Liege
* Steaua Bucuresti Thắng trung cuộc 4-3
Fenerbahce 2 - 2 Dynamo Kyiv
* Dynamo Kyiv Thắng trung cuộc 5-3
Rabotnicki 0 - 1 Lille
* Lille Thắng trung cuộc 4-0
Ruzomberok 0 - 2 CSKA Moscow
* CSKA Moscow Thắng trung cuộc 5-0
Ajax Amsterdam 0 - 2 FC Copenhagen
* FC Copenhagen Thắng trung cuộc 3-2
Legia Warsaw 2 - 3 Shakhtar Donetsk
* Shakhtar Donetsk Thắng trung cuộc 4-2
AEK Athens 3 - 0 Hearts
* AEK Athens Thắng trung cuộc 4-1
Chievo 2 - 2 Levski Sofia
* Levski Sofia Thắng trung cuộc 4-2
Arsenal 2 - 1 Dinamo Zagreb
* Arsenal Thắng trung cuộc 5-1
